With just an audio file playing back, and the transport set to beats/bars mode, try to change the tempo in the transport. Does the playback stop momentarily while making the tempo change or does the audio continue playingback smoothly without any audible gaps?
For me here the audio cuts out when changing the transport tempo such that if I keep nudging it up and down I can achieve silence until I stop making adjustments.
If the transport is set to 'samples' or 'seconds' instead of 'beats/bars' then it plays throughout the tempo adjustments!
Is this the same for everyone?